The Amber Molecular Dynamics Package
Time 2020-06-30 14:09:32Web Name: The Amber Molecular Dynamics Package
WebSite: http://ambermd.org
ID:15122
Keywords:
Amber,The,Molecular,moleculardynamics,proteins,nucleic acids,biomolecularsimulatDescription:
Amber is a suite of biomolecular simulation programs. It began inthe late 1970's, and ismaintained by an active development community; see our history page and our contributors page for more information.The term "Amber" refers to two things. First, it is a set of molecular mechanicalforce fields for the simulation of biomolecules(these force fields are in the public domain, and are used in a variety ofsimulation programs). Second, it is a package ofmolecular simulation programs which includes source code and demos.Amber is distributed in two parts:AmberTools20 andAmber20. You can use AmberTools20 withoutAmber20, but not vice versa. See the DownloadAmber link for information on how to download the code.Amber is developed in an active collaboration of David Case at RutgersUniversity, TomCheatham at the University of Utah, Ken Merz at Michigan StateUniversity, AdrianRoitberg at the University of Florida, CarlosSimmerling at SUNY-Stony Brook, Ray Luo at UC Irvine, Junmei Wang atthe University of Pittsburgh, RossWalker at GSK, and manyothers. Amber was originally developed under the leadership of PeterKollman.Conflex has created an Introduction to Amber in Japanese.A good general overview of the Amber codes can be found in: R. Salomon-Ferrer, D.A. Case, R.C. Walker. An overview of the Amberbiomolecular simulation package. WIREs Comput. Mol. Sci. 3,198-210 (2013). (PDF)D.A. Case, T.E. Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A.Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecularsimulation programs. J. Computat. Chem. 26, 1668-1688 (2005).See the force field page for information aboutforce fields that the code supports.TAGS:Amber The Molecular moleculardynamics proteins nucleic acids biomolecularsimulat
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