miRBase

Time 2021-01-01 01:10:09

Web Name: miRBase

WebSite: http://www.mirbase.org

ID:152517

Keywords:

miRBase,

Description:

By sam (June 7, 2018) MicroRNA Gene Ontology annotations You might have noticed some additional information on the mature miRNA pages in the last few weeks. See for example: http://mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000123 http://mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000069 The new section QuickGO function contains a set of high quality manual annotations of Gene Ontology terms for mature miRNAs, the vast majority of which come from the work of Rachael Huntley et [...] By sam (March 12, 2018) miRBase 22 release After repeated and unreasonable delay, miRBase 22 is finally released. As you might expect with such a long gap, the number of sequences in the database has jumped significantly by over a third. The vast majority of the increase comes from new microRNA annotations in species not previous represented in the database. Indeed, there [...]The miRBase database is a searchabledatabase of published miRNA sequences and annotation. Each entry inthe miRBase Sequence database represents a predicted hairpin portionof a miRNA transcript (termed mir in the database), with informationon the location and sequence of the mature miRNA sequence (termedmiR). Both hairpin and mature sequences are available for searching and browsing, and entries can also beretrieved by name, keyword, references and annotation. All sequenceand annotation data are also available fordownload.The miRBase Registry provides miRNAgene hunters with unique names for novel miRNA genes prior topublication of results. Visit the help pages formore information about the naming service.ReferencesIf you make use of the data presented here, please cite the following articles in addition to the primary data sources:miRBase: from microRNA sequences to function.Kozomara A, Birgaoanu M, Griffiths-Jones S.Nucleic Acids Res 2019 47:D155-D162miRBase: annotating high confidence microRNAs using deepsequencing data.Kozomara A, Griffiths-Jones S.Nucleic Acids Res 2014 42:D68-D73miRBase: integrating microRNA annotation and deep-sequencing data.Kozomara A, Griffiths-Jones S.Nucleic Acids Res 2011 39:D152-D157miRBase:tools for microRNA genomics.Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.Nucleic Acids Res 2008 36:D154-D158miRBase:microRNA sequences, targets and gene nomenclature.Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, EnrightAJ.Nucleic Acids Res 2006 34:D140-D144The microRNA Registry.Griffiths-Jones S. Nucleic Acids Res 2004 32:D109-D111The following publications provide guidelines on miRNA annotation:A uniform system for microRNA annotation.Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. RNA 2003 9(3):277-279Criteriafor annotation of plant MicroRNAs.Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, CaoX, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE,Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y,Weigel D, Zhu JK.Plant Cell. 2008 20(12):3186-3190

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